.. _api:

.. module:: motif

Core API
========

Core
----
.. automodule:: motif.core
    :members:

Plot
----
.. automodule:: motif.plot
    :members:

Run
---
.. automodule:: motif.run
    :members:

Utils
-----
.. automodule:: motif.utils
    :members:

Contour Extractors
==================

HLL
---
.. automodule:: motif.contour_extractors.hll
    :members:
    :show-inheritance:
    :inherited-members:

Peak Streaming
--------------
.. automodule:: motif.contour_extractors.peak_stream
    :members:
    :show-inheritance:
    :inherited-members:

Salamon
-------
.. automodule:: motif.contour_extractors.salamon
    :members:
    :show-inheritance:
    :inherited-members:


Feature Extractors
==================

Bitteli
-------
.. automodule:: motif.feature_extractors.bitteli
    :members:
    :show-inheritance:
    :inherited-members:

Cesium
------
.. automodule:: motif.feature_extractors.cesium
    :members:
    :show-inheritance:
    :inherited-members:

Melodia
-------
.. automodule:: motif.feature_extractors.melodia
    :members:
    :show-inheritance:
    :inherited-members:

Utils
-----
.. automodule:: motif.feature_extractors.utils
    :members:

Contour Classifiers
===================

Multivariate Gaussian
---------------------
.. automodule:: motif.contour_classifiers.mv_gaussian
    :members:
    :show-inheritance:
    :inherited-members:

Random Forest
-------------
.. automodule:: motif.contour_classifiers.random_forest
    :members:
    :show-inheritance:
    :inherited-members:

Contour Decoders
================

Maximum
-------
.. automodule:: motif.contour_decoders.maximum
    :members:
    :show-inheritance:
    :inherited-members:

Viterbi
-------
.. automodule:: motif.contour_decoders.viterbi
    :members:
    :show-inheritance:
    :inherited-members: